FastQCFastQC Report
Wed 8 May 2024
EGAF00007960480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533067
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29520.5537765421607415No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27330.5126935263297109No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15420.2892694539335581No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13510.2534390611311524No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA12010.2253000091920903No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10600.19884930036937193No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10150.19040758478765335No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10010.18778127327334088No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8770.16451965700371624No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8040.1508253183933727No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7770.14576028904434152No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7340.1376937608218104No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6910.12962723259927927No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6680.12531257796862308No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6640.1245622032502481No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6420.12043514229918566No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6390.11987236126040442No Hit
GTCCAGACGCGCCAGTGCCAGCAGCATCTGGTAGGCCTGTTCGT6190.11612048766852948No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC6100.11443214455218575No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5650.10599042897046712No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5590.10486486689290464No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5350.10036261858265472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)