FastQCFastQC Report
Wed 8 May 2024
EGAF00007960482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512592
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29050.5667275337890564No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25700.5013734119923838No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14480.2824858757062147No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA12550.2448340980741018No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA11350.22142366638574149No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10220.19937884321253552No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9370.18279645409994694No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9240.18026032400037456No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7750.15119237132066046No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7640.14904641508256078No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7160.13968224240721666No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6910.13480506913880827No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6440.12563598339420046No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6380.12446546180978245No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6340.12368511408683709No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6120.11939320161063771No Hit
GTCCAGACGCGCCAGTGCCAGCAGCATCTGGTAGGCCTGTTCGT5980.11666198458032899No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC5870.11451602834222929No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5830.11373568061928395No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5570.10866342042013921No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5440.10612729032056685No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5150.10046976932921309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)