FastQCFastQC Report
Wed 8 May 2024
EGAF00007960483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512592
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59061.152183412928801No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42900.836922932858882No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16070.3135046976932921No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15070.2939960046196585No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13390.26122140025595403No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13050.2545884446109186No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG11580.22591066579267718No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9260.18065049786184723No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9130.17811436776227488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8390.163677934887786No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7230.14104785092237102No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7180.14007241626868933No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6940.13539032993101727No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6920.1350001560695446No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6400.1248556356712551No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC6290.12270967943315542No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6090.1188079408184287No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5950.11607672378811998No Hit
GCAGATGGTACTACCGTTACGAGCGGCTCCA5850.11412585448075663No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5740.11197989824265693No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5620.1096388550738209No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5610.10944376814308455No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5300.10339607329025813No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5130.10007959546774042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)