FastQCFastQC Report
Wed 8 May 2024
EGAF00007960484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531683
Total Bases23.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30030.5648102346699068No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26710.5023670119225178No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15400.28964627418969574No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13490.2537226129103244No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA11860.22306524752531112No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10390.1954171940799311No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9960.18732966824216687No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9630.18112296236667338No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8530.16043394278169512No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8310.15629613886469945No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7130.1341024633099046No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6830.12846000342309233No Hit
GTCCAGACGCGCCAGTGCCAGCAGCATCTGGTAGGCCTGTTCGT6820.12827192142686525No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6760.1271434294495028No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6550.12319370752873424No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6540.12300562553250716No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6410.12056055958155519No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6340.11924398560796563No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC6090.11454193570228878No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5550.1043855079060267No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5370.10100003197393936No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5320.10005962199280398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)