FastQCFastQC Report
Wed 8 May 2024
EGAF00007960485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531683
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59011.1098718597359705No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17170.32293678752188804No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16190.3045047518916347No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14190.26688835264621963No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12920.2430019391253811No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG12320.2317170193517566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10170.19127939016293544No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9890.18601309426857734No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9680.18206337234780876No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9260.1741639285062716No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7880.14820861302693522No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7360.1384283492231273No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7120.1339143813136775No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6910.12996465939290894No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6810.1280838394306382No Hit
GCAGATGGTACTACCGTTACGAGCGGCTCCA6770.12733151144572988No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC6570.12356987152118838No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6400.1203724775853281No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6380.11999631359287395No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT6290.11830357562683028No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6050.11378960771738046No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5660.10645440986452454No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5460.10269276993998304No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5420.10194044195507472No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5410.10175235995884765No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5370.10100003197393936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)