FastQCFastQC Report
Wed 8 May 2024
EGAF00007960486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518586
Total Bases22.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29790.5744466684407215No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27470.5297096335034112No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14390.27748531583961006No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13150.25357414199380623No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA11530.22233535035654645No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9740.18781841391784584No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9730.18762558187070227No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9550.18415460502211783No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8330.1606290952706012No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7690.14828784425341218No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7290.14057456236766902No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7180.13845340984908963No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6520.12572649473761344No Hit
GTCCAGACGCGCCAGTGCCAGCAGCATCTGGTAGGCCTGTTCGT6460.12456950245475196No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6420.12379817426617765No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6270.12090569355902396No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6140.11839887694615743No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5940.11454223600328586No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC5790.11164975529613219No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5530.10663612207039912No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5500.10605762592896838No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5460.10528629774039407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)