FastQCFastQC Report
Wed 8 May 2024
EGAF00007960488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564712
Total Bases24.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25280.44766181699698254No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24030.42552664012806524No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17910.3171528141778464No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16260.2879343807108756No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15680.277663658643698No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15540.2751845188343793No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13840.24508067829265182No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13190.2335703863208149No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12700.22489339698819932No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12180.2156851634107297No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11760.20824774398277351No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT10730.19000835824278572No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT10300.18239385739987818No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10290.18221677598492683No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10100.1788522291008514No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10030.17761265919619204No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC10020.1774355777812407No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9590.16982107693833318No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9090.16096700619076626No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG9000.15937327345620422No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8950.15848786638144752No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG8840.15653997081698282No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8730.15459207525251809No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8680.1537066681777614No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8600.1522900168581507No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7860.13918599215175168No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7320.12962359574437943No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7170.12696737452010937No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7130.126259048860304No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7040.12466531612574197No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6970.12342574622108261No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6870.12165493207156922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6680.11829038518749381No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG6450.11421751264361303No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6350.11244669849409966No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6100.1080196631203162No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG6060.10731133746051086No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6050.1071342560455595No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5930.10500927906614343No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5870.10394679057643542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)