FastQCFastQC Report
Wed 8 May 2024
EGAF00007960489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564712
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36070.6387326637294762No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31730.5618793296405956No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25350.4489013869016419No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17640.31237161597416024No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17370.30759041777047413No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13930.24667441102721385No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13910.2463202481973112No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13470.23852866593945232No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13450.23817450310954966No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12890.22825794387227472No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12680.2245392341582966No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12350.21869554746490244No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11200.19833118474549857No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC10920.19337290512686112No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10530.18646672994375896No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC10250.18150845032512147No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10060.17814390344104605No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9950.17619600787658135No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9920.17566476363172734No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT9620.1703523211831872No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9520.1685815070336738No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC9460.16751901854396578No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9400.16645653005425773No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9280.16433155307484168No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9030.15990451770105824No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8920.15795662213659353No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8510.15069628412358865No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8120.14379010894048647No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7870.13936307356670302No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7810.138300585076995No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7590.13440479394806557No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7390.1308631656490388No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7080.12537364178554733No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6860.12147785065661788No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6730.1191757922622505No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6690.11846746660244514No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6590.11669665245293175No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6490.11492583830341838No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG6480.11474875688846704No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC6380.11297794273895366No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6320.11191545424924564No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6260.1108529657595376No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5990.10607176755585149No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5950.10536344189604613No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5830.10323846491663007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)