FastQCFastQC Report
Wed 8 May 2024
EGAF00007960490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539351
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24090.4466479157357639No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22770.42217405733928365No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17030.31574985491822577No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15610.28942191634019404No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15060.2792244753416606No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14820.27477468290593693No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13600.25215490469100826No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12290.22786645431268324No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12230.2267540062037523No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11960.22174798971356316No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11090.20561749213406483No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10320.19134107473611806No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT10130.18781832239117013No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9670.17928955355603307No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT9670.17928955355603307No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9240.1713170087753615No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG9070.1681650724667239No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8680.16093415975867292No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8430.1562989593047941No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG8420.15611355128663895No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8250.15296161497800134No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8240.15277620695984617No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8130.1507367187601395No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8040.1490680465967431No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8040.1490680465967431No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7860.14573070226995036No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6780.12570663630919382No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6620.12274010801871138No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6610.12255470000055622No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6570.1218130679279356No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6560.12162765990978046No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6540.12125684387347016No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG6470.11995898774638408No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6400.11866113161929802No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6120.11346970711095372No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5660.10494093827581669No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5600.10382849016688576No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5500.10197440998533423No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5490.10178900196717908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)