FastQCFastQC Report
Wed 8 May 2024
EGAF00007960491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539351
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44570.8263635369175175No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35530.6587546885052591No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29110.5397227408496508No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24430.4529517883530392No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16540.3066648620286233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15370.28497212390447035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13320.24696348018266398No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13000.2410304236016991No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12850.23824930332937178No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12830.23787848729306146No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12220.22656859818559716No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11930.22119176565909768No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11460.21247758880580547No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11020.20431963600697875No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC10120.18763291437301496No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9920.1839247540099119No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC9510.17632302526555063No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC9250.17150241679351666No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9070.1681650724667239No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT8930.16556936021255175No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8780.16278823994022446No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8480.15722599939556986No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8360.15500110317770804No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8140.15092212677829464No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8110.1503659027238292No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7980.1479555984878122No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7910.14665774236072615No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7860.14573070226995036No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7400.13720193343481332No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7030.13034183676307265No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7020.1301564287449175No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6820.12644826838181444No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6660.12348174009133199No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6550.1214422518916253No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG6530.12107143585531499No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6450.11958817171007377No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6450.11958817171007377No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6440.11940276369191863No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6110.11328429909279858No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5870.1088345066570749No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5840.10827828260260944No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5680.10531175431212698No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.10457012223950637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)