FastQCFastQC Report
Wed 8 May 2024
EGAF00007960492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563692
Total Bases24.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25410.450778084485854No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23370.41458810839962246No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18380.3260645884632033No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16070.2850847626008529No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15970.28331074416525337No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15770.2797627072940542No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13800.24481454411274242No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13310.23612185377830447No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13180.233815629812025No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12680.2249455376340271No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11750.20844716618295098No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT10880.1930132057932346No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10120.17953066568267778No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT10060.17846625462131802No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10000.17740184355995828No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9890.17545042328079874No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9330.16551592004144108No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9310.16516111635432115No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG9240.16391930344940145No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8750.1552266131149635No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG8700.1543396038971637No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8650.1534525946793639No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8550.15167857624376432No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8390.14884014674680499No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8290.1470661283112054No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8170.1449373061884859No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7230.12826153289384984No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7210.1279067292067299No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7080.12560050524045044No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7070.1254231033968905No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7000.12418129049197078No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6990.12400388864841083No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6860.12169766468213138No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG6420.11389198356549321No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6340.11247276881701355No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6320.11211796512989364No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6190.10981174116361417No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6150.10910213378937433No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG6140.10892473194581437No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5670.10058684529849633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)