FastQCFastQC Report
Wed 8 May 2024
EGAF00007960493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563692
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36000.6386466368158498No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31450.5579287979960688No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25790.45751935454113235No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17650.31311425388332637No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17000.3015831340519291No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14800.26255472846873823No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14030.24889478651462146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13680.24268572199002292No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13520.2398472924930636No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13400.2377184703703441No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12780.22671955606962668No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12340.2189138749529885No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11520.2043669237810719No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC11250.1995770740049531No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10590.18786855232999583No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC10170.18041767490047758No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10000.17740184355995828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9930.17616003065503857No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9800.1738538066887591No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC9640.17101537719179977No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT9610.1704831716611199No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9220.16356449976228152No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9150.16232268685736181No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9140.16214528501380185No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8910.15806504261192283No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8750.1552266131149635No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8610.15274298730512406No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8300.14724353015476535No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7770.1378412324460876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7380.1309225605472492No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7350.13039035501656934No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7240.1284389347374098No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7120.1263101126146903No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7090.1257779070840104No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6760.1199236462465318No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG6670.11832702965449218No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6610.11726261859313242No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6510.11548860015753283No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC6410.11371458172193326No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6400.11353717987837329No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6360.11282757250413347No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6330.11229536697345359No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6240.11069875038141397No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6150.10910213378937433No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6090.10803772272801458No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5760.10218346189053595No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5650.10023204161137642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)