FastQCFastQC Report
Wed 8 May 2024
EGAF00007960494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546581
Total Bases24 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23950.4381784218624504No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22610.41366238489812124No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16800.3073652395527836No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15500.2835810245873896No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15460.2828492025884544No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15260.2791900925937784No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC12690.23217052916219189No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12680.23198757366245806No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12670.2318046181627243No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12280.2246693536731061No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10900.19942149470984172No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10710.19594534021489954No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT10190.18643165422874194No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9930.18167481123566315No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9830.17984525623832515No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT9800.17929638973912376No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9310.17033157025216755No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG9070.16594063825855637No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8950.16374517226175078No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG8790.16081788426600996No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8600.15734172977106778No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8540.15624399677266498No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8180.1496575987822482No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8040.14709622178597498No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7990.146181444287306No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7960.1456325777881046No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6800.12440973981898383No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG6740.12331200682058102No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6710.12276314032137964No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6690.12239722932191202No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6570.12020176332510643No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6410.11727447532936565No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6390.11690856432989803No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6280.11489605383282625No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6270.11471309833309244No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5770.10556532334640245No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG5730.10483350134746726No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5690.10410167934853205No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5670.10373576834906445No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5600.10245507985092786No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5570.10190621335172646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)