FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546581
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44390.8121394633183371No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37530.6866319905009505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29570.5409994127128458No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24160.44202048735686017No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16860.3084629725511864No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16770.30681637305358217No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13700.25064903463530563No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13490.24680696914089587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13240.24223308164755086No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13150.24058648214994668No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12280.2246693536731061No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11960.21881477768162452No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11760.21515566768694852No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11650.2131431571898767No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC10200.18661460972847574No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9890.18094298923672794No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9740.17819865674072094No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9550.17472250224577876No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC9500.17380772474710976No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC9200.16831905975509576No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9170.16777019325589437No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8970.16411108326121837No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8820.16136675076521137No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT8730.1597201512676072No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8710.15935424026813957No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8480.1551462637742622No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8450.15459739727506078No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8190.14984055428198198No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7610.13922913529742162No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7390.135204114303278No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6820.12477565081845142No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6750.12349496232031483No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG6690.12239722932191202No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6650.12166540732297683No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6630.12129949632350924No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6630.12129949632350924No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6580.12038471882484024No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6490.11873811932723603No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6280.11489605383282625No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6030.11032216633948125No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5980.10940738884081226No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5950.10885852234161085No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5830.10666305634480526No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC5740.10501645684720105No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5580.10208916885146027No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5480.10025961385412227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)