FastQCFastQC Report
Wed 8 May 2024
EGAF00007960496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518316
Total Bases22.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23370.45088324497024984No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22670.43737797019578795No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18610.3590473765039088No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC16700.3221972696193056No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16350.31544463223207464No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG15620.3013605599672787No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14890.28727648770248265No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13750.26528218306978757No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11840.22843207618518432No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11750.22669568371418208No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11070.21357627393327624No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9800.18907384684246675No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9310.1796201545003434No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8960.17286751711311246No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8060.15550359240309003No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG7780.15010148249330524No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7760.14971561749974918No Hit
ACCTTCACCGTTTTTCTGGGAAGCACCCAGGGAGCGCAGAACGC7290.14064779015118192No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7220.1392972626737357No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7180.1385255326866236No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6990.13485981524784107No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG6660.12849304285416618No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6580.12694958287994199No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6380.1230909329443814No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6340.12231920295726932No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6170.11903935051204284No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6040.11653122805392849No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5960.11498776807970428No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5930.11440897058937018No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5910.11402310559581413No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5860.11305844311192399No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5590.10784926569891726No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5580.10765633320213924No Hit
CGCGTTATCTGCGGCGATTTCGGTTTCCATCTGAACCAGTTCTG5440.10495527824724686No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5420.10456941325369079No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5400.10418354826013473No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC5300.10225422329235448No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5200.1003248983245742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)