FastQCFastQC Report
Wed 8 May 2024
EGAF00007960497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518316
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30450.5874794526890931No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23660.4564782873768126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18730.3613625664652451No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18110.34940075166500745No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17380.3353166794002114No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG16980.32759937952909035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15650.3019393574576127No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT15490.2988524375091643No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13330.25717901820511035No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12140.23422005108852517No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12100.23344832110141303No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10410.20084272914592644No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10140.19563355173291969No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9920.1913890368038031No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9120.1759544370615609No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8540.1647643522484353No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8350.1610986348096528No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG7940.1531884024417537No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7650.14759336003519088No Hit
CCGGGCGTTCGTCGTGAAATGCAGATGGTGA7430.1433488451060743No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7310.14103365514473795No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7280.14045485765440388No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7260.14006899266084782No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7240.13968312766729177No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6750.13022943532516842No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6740.1300365028283904No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6700.1292647728412783No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6530.12598492039605183No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG6520.12579198789927382No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6510.12559905540249577No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6480.1250202579121617No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6450.12444146042182762No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6230.12019694549271101No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6220.12000401299593298No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6130.11826762052493074No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5770.11132205064092175No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG5750.11093618564736571No Hit
GCTCAGGCCATCGACTATGCTGGCTACTACG5540.10688460321502712No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5510.10630580572469304No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5480.10572700823435896No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5430.10476234575046883No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5340.10302595327946658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)