FastQCFastQC Report
Wed 8 May 2024
EGAF00007960498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497082
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21690.4363465182806861No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21290.4282995562100418No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18560.3733790400778946No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC16720.3363630145529309No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15710.3160444353245541No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14760.29693290040677395No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14250.28667302376670245No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12730.25609456789825424No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11340.22813137470276534No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10240.20600222900849355No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9730.19574235236842213No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9690.1949376561613577No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9610.19332826374722883No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9160.18427543141775402No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8180.16456037434467555No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG7710.1551051939116685No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7600.1528922793422413No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7260.1460523615821937No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7190.14464414321983093No Hit
ACCTTCACCGTTTTTCTGGGAAGCACCCAGGGAGCGCAGAACGC6970.14021831408097657No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6630.13337839632092896No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6440.1295560893373729No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6070.12211264942202694No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6020.12110677916319641No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6010.12090560511143031No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5810.11688212407610817No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5720.1150715576102132No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5550.11165159873018939No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5490.11044455441959274No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5370.10803046579839946No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5350.10762811769486724No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5340.10742694364310114No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5260.10581755122897228No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5260.10581755122897228No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5200.10461050691837565No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5120.10300111450424677No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC5060.10179407019365015No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5040.10139172209011793No Hit
CGCGTTATCTGCGGCGATTTCGGTTTCCATCTGAACCAGTTCTG5000.1005870258830535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)