FastQCFastQC Report
Wed 8 May 2024
EGAF00007960500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516404
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22790.44132113616470825No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22020.4264103298967475No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19040.36870357317139296No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC17160.33229796825741087No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15980.30944764176884765No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG15680.3036382367293824No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15430.2987970658631614No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13640.2641342824610189No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12650.24496324583078363No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10950.21204328394048072No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9720.1882247232786733No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9650.1868691954361314No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9500.18396449291639877No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8800.17040921449097993No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG8340.16150146009713326No Hit
ACCTTCACCGTTTTTCTGGGAAGCACCCAGGGAGCGCAGAACGC7900.15298099937258425No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7800.15104453102609583No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7790.150850884191447No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7570.14659065382917252No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7560.14639700699452365No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7190.13923207411251656No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7100.137489252600677No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6260.12122291849017436No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6200.12006103748228132No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6070.11754362863184639No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6040.11696268812789985No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6030.11676904129325101No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5900.11425163244281608No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5900.11425163244281608No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5660.1096041084112439No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC5650.10941046157659506No Hit
CGCGTTATCTGCGGCGATTTCGGTTTCCATCTGAACCAGTTCTG5590.10824858056870201No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5540.1072803463954578No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5540.1072803463954578No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5500.10650575905686245No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5490.10631211222221362No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5440.10534387804896943No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5290.10243917552923681No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5210.10089000085204607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)