FastQCFastQC Report
Wed 31 May 2023
EGAF00007960502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503758
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21800.43274747001536457No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21800.43274747001536457No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18240.36207861711377287No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC16140.32039193422238454No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15560.30887846942381064No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14760.29299782832232935No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14700.2918067802397183No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13230.26262610221574645No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11750.23324691617800608No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10900.21637373500768228No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10160.2016841419888121No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9820.19493486952068256No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9360.18580350088733083No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8570.17012136779961806No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7700.15285117060175718No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG7650.15185863053291462No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7450.14788847025754429No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7150.14193322984448883No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7150.14193322984448883No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6640.13180932114229452No Hit
ACCTTCACCGTTTTTCTGGGAAGCACCCAGGGAGCGCAGAACGC6600.13101528908722046No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6580.13061827305968343No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6440.1278391608669242No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6220.12347198456401685No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG6070.1204943643574891No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6040.11989884031618357No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5820.1155316640132762No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5570.11056896366906331No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5570.11056896366906331No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5540.10997343962775778No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5510.10937791558645223No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5270.10461372325600786No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5220.10362118318716527No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5200.10322416715962825No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5150.10223162709078566No Hit
TTTAGTGGACTGCGGCAGAACCATGGTTTCGCCCATCACGACGA5050.1002465469531005No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5040.10004803893933199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)