FastQCFastQC Report
Wed 8 May 2024
EGAF00007960503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503758
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42980.8531874431770811No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29960.5947300092504735No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21630.42937283378129976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18100.35929950492101365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16730.33210390703472703No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16460.32674419066297705No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG16370.3249576185390604No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14730.2924023042810238No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14060.2791022673585333No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12540.24892904926571885No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11900.23622453638453386No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11760.23344542419177464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10130.20108861794750654No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9980.19811099774097882No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8780.1742900360887569No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8000.15880641101481266No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7840.1556302827945164No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG7760.1540422186843683No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7500.14888101032638687No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7380.14649891416116467No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7130.14153621381695178No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6880.1365735134727389No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6680.13260335319736857No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6660.13220633716983154No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6500.1290302089495353No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6430.12764065285315568No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6370.1264496047705446No Hit
CCGGGCGTTCGTCGTGAAATGCAGATGGTGA6360.12625109675677607No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6100.12108988839879466No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6050.12009734832995207No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5970.11850928421980396No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5940.1179137601784984No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG5810.1153331559995077No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5800.11513464798573918No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5560.11037045565529481No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5550.11017194764152628No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5500.1091794075726837No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5460.10838537551760964No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5290.10501073928354489No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5230.10381969120093378No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5160.10243013510455416No Hit
ATGGGTCGTAACATGAAACAGCCGGATCAGC5070.10064356298063752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)