FastQCFastQC Report
Wed 8 May 2024
EGAF00007960504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566145
Total Bases24.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16580.2928578367732648No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14170.2502892368562824No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12100.21372616555829335No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11690.20648420457656608No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10010.17680982787095179No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8250.1457223856079273No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7940.14024675657296276No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7540.13318142878591174No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7450.13159173003382527No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7080.12505630183080305No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6470.11428167695555025No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6400.11304524459281633No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5700.10068092096547704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)