FastQCFastQC Report
Wed 8 May 2024
EGAF00007960505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566145
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16410.2898550724637681No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15460.27307491896952196No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14950.2640666260410319No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14310.2527621015817503No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11820.20878043610735764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9870.17433696314548394No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9250.16338570507555486No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8840.15614374409382756No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8540.1508447482535393No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8280.14625228519195613No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7460.13176836322850155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7040.12434976905209796No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6080.10739298236317552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)