FastQCFastQC Report
Wed 8 May 2024
EGAF00007960506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540291
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15260.28244038860539966No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14690.2718905182577537No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10840.20063262204996937No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10790.19970719482649166No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9560.17694168512893976No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8290.1534358336526057No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7890.14603241586478397No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7350.1360378018512246No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7340.13585271640652907No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7130.13196592206792265No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6230.11530823204532373No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5980.11068109592793512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)