FastQCFastQC Report
Wed 8 May 2024
EGAF00007960507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540291
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45800.8476913367055903No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15400.2850315848311373No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14900.27577731259636007No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14360.26578269858280074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13480.2494951794495929No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10080.18656612825310806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9160.16953826734111802No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8400.1554717735442567No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8330.1541761754313879No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8060.14917886842460823No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7510.13899916896635334No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6430.1190099409392346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5550.10272242180602675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)