FastQCFastQC Report
Wed 8 May 2024
EGAF00007960508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563145
Total Bases24.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16640.2954834012554493No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16230.2882028607197081No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11230.1994157810155466No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10600.1882286089728223No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9790.17384510206074813No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8250.1464986815118664No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8050.14294719832369993No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7940.1409938825702084No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7780.1381526960196752No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7780.1381526960196752No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6580.11684379689067648No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6380.11329231370251001No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5910.10494632821031882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)