FastQCFastQC Report
Wed 8 May 2024
EGAF00007960509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563145
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17180.30507240586349876No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16440.29193191806728286No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15100.2681369807065676No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14110.2505571389251436No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10880.19320068543625532No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9960.1768638627706896No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.1690505997567234No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8920.15839615019222403No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8860.15733070523577408No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8370.14862957142476627No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7930.14081630841080006No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6920.12288131831055946No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6370.11311473954310168No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5720.1015724191815607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)