FastQCFastQC Report
Wed 8 May 2024
EGAF00007960510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548538
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15580.28402772460613485No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14640.2668912636863809No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11900.2169403031330555No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10540.19214712563213487No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9540.17391684805792854No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7670.13982622899416267No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7540.13745629290951583No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7480.13636247625506345No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7330.13362793461893252No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7200.13125799853428569No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6430.1172206848021468No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6000.10938166544523806No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5520.10063113220961901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)