FastQCFastQC Report
Wed 8 May 2024
EGAF00007960511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548538
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44670.8143464992397974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15740.2869445690180079No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15570.28384542183039274No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15330.2794701552125833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13060.2380874251191349No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11190.20399680605536902No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9660.1761044813668333No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8430.1536812399505595No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8270.15076439553868648No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7730.14092004564861504No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7180.13089339298280156No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6620.12068443754124601No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5740.10464179327594442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)