FastQCFastQC Report
Wed 8 May 2024
EGAF00007960513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517336
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52771.020033401889681No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11910.23021788547481714No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9060.17512796325792135No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8490.1641099788145422No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8470.16372338286916047No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7950.15367188828923564No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7810.15096571667156355No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7310.14130081803702044No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7130.1378214545285849No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5910.11423910186029969No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5840.11288601605146364No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5370.10380101133499313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)