FastQCFastQC Report
Wed 8 May 2024
EGAF00007960515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495118
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50031.010466191897689No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42970.8678739209642954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10560.21328249023465115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8300.16763680577155346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7420.14986326491866586No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7370.1488534046429336No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7280.14703565614661557No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6950.1403705783267827No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6900.13936071805105046No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5550.11209449060627971No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5410.1092668818342294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)