FastQCFastQC Report
Wed 8 May 2024
EGAF00007960517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516118
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50330.9751645941431998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11510.2230110168604854No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10020.194141649777764No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8380.16236597057262098No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8090.15674710046927254No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7890.15287201763937705No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7630.1478344099605129No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7460.14454058955510174No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7250.14047175258371147No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5860.11353992691593782No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5810.11257115620846396No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5710.1106336147935162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)