FastQCFastQC Report
Wed 8 May 2024
EGAF00007960519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502488
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52451.0438060212383182No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42820.8521596535638661No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11100.22090079763098822No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7630.15184442215535496No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7510.14945630542420912No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7190.1430879941411536No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7120.14169492604798523No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7090.14109789686519877No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7030.13990383849962587No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5760.11462960309499928No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5690.11323653500183088No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5440.10826129181194376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)