FastQCFastQC Report
Wed 8 May 2024
EGAF00007960520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497330
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18290.3677638590070979No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16460.3309673657330143No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16240.32654374359077476No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG16070.32312549011722597No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG15670.31508254076769954No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15260.3068385176844349No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15120.3040234854121006No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13840.2782860474936159No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13360.2686345082741841No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11640.2340498260712203No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11570.2326423099350532No Hit
GGCGTCAGTTGCGTTAACGCCGGCCGCTACGTTGGTGATGCGAC11420.22962620392898073No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT10610.21333923149618964No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9700.19504152172601694No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9080.18257495023425088No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8830.17754810689079686No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8400.1689019363400559No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8060.1620654293929584No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7790.15663643858202803No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7640.1536203325759556No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7510.1510063740373595No Hit
CAGATCGTCATCCTGGATTTCCAGCGCGTTGTCCTGGAAAACCT7300.1467838256288581No Hit
AACACGCGGTGGCAGCAGCCATTTGGATGCTTCAATGCTACCCA7170.144169867090262No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7050.14175698228540407No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7030.14135483481792774No Hit
CAGACCCAGGTCGTCATCCTGGATTTCCAGTGCGTTATCCTGGA6860.13793658134437897No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6500.13069792692980514No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6260.12587215732008927No Hit
AATGCTGCCAGAACCAATTGCCACAGAATCTTTACCCTGCGCGT6200.1246657149176603No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA5850.11762813423682465No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5710.11481310196449036No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5680.11420988076327589No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5670.11400880702953774No Hit
ACGCTGATTGGTAGAGCTGCCAACGGAGATGGTGTTTTCTTCTT5610.11280236462710876No Hit
TGGCAGGCCAACCACGCGCGGCGGCAGCAGCCATTTAGATGCTT5610.11280236462710876No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5580.11219914342589428No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5440.10938411115356No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5370.10797659501739287No Hit
CGGACGTACCGGGGCGAATGCCTGACCCGCTGCCTGGGTCAGGC5360.10777552128365471No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5350.10757444754991655No Hit
ACGACCTTCGCCACGGCGACGGCGGCGCTGGTTCAGCGGAGCAC5140.10335189914141515No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5120.10294975167393884No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5110.10274867794020066No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5110.10274867794020066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)