FastQCFastQC Report
Wed 8 May 2024
EGAF00007960522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477199
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16870.3535212772868342No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15130.3170585017990398No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG15000.31433427144650344No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14860.31140048491300276No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG14760.3093049231033594No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14760.3093049231033594No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13880.2908639791784978No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13030.2730517037965293No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12030.2520960857000958No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11510.2411991642899503No Hit
GGCGTCAGTTGCGTTAACGCCGGCCGCTACGTTGGTGATGCGAC11030.2311404676036622No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10640.2229677765460531No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT10260.21500464166940833No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9680.20285038317347687No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8530.1787514223625783No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8360.17518896728618458No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8200.17183606839075521No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7320.15339512446589368No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7300.152976012103965No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7220.15129956265625033No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7110.14899444466564266No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6960.14585110195117762No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6830.14312687159864124No Hit
CAGACCCAGGTCGTCATCCTGGATTTCCAGTGCGTTATCCTGGA6770.14186953451285522No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6740.14124086596996221No Hit
AACACGCGGTGGCAGCAGCCATTTGGATGCTTCAATGCTACCCA6630.13893574797935454No Hit
CAGATCGTCATCCTGGATTTCCAGCGCGTTGTCCTGGAAAACCT6330.13264906255042447No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5830.12217125350220767No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5800.12154258495931466No Hit
ACGCTGATTGGTAGAGCTGCCAACGGAGATGGTGTTTTCTTCTT5710.11965657933063564No Hit
AATGCTGCCAGAACCAATTGCCACAGAATCTTTACCCTGCGCGT5620.11777057370195662No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5550.11630368043520627No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5440.11399856244459858No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5380.11274122535881256No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA5360.11232211299688391No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5330.1116934444539909No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5270.11043610736820489No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5260.11022655118724053No Hit
TGGCAGGCCAACCACGCGCGGCGGCAGCAGCCATTTAGATGCTT5140.1077118770156685No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5020.10519720284409648No Hit
CGGACGTACCGGGGCGAATGCCTGACCCGCTGCCTGGGTCAGGC4890.10247297249156014No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4790.10037741068191677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)