FastQCFastQC Report
Wed 8 May 2024
EGAF00007960523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477199
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41320.8658861397446349No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36130.7571264818241447No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17560.36798065377337336No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC15240.3193636197896475No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15170.31789672652289713No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14890.31202915345589577No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14520.30427557476021533No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG12920.2707465858059216No Hit
GATGGCGCGGACGCTAACGCTCAGGGTAAAG11610.24329472609959366No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG10900.22841623725112586No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10860.22757801252726848No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10700.2242251136318391No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.21898620910773076No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9670.20264082699251257No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC9520.19949748427804753No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9430.1976114786493685No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8700.182313877438972No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7900.16554938296182514No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7640.16010092225675243No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7550.1582149166280734No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7430.15570024245650138No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7390.15486201773264402No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7190.15067089411335732No Hit
GTATCTGCTATCCAGATCGGTAAGTGGGGCA6990.14647977049407063No Hit
CTGGGTGTATCCGCAATCCAGATTGGCAAAT6840.1433364277796056No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6630.13893574797935454No Hit
CACGAATCTACCGTGCGTTTCCCGGAGTACA6390.13390639963621048No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6330.13264906255042447No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6260.1311821692836741No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6240.13076305692174545No Hit
ATTGTAACCACGGGTTCTACTAAATACTTCA6150.12887705129306642No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5870.123009478226065No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC5580.11693234897809927No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5580.11693234897809927No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5560.1165132366161706No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5540.11609412425424195No Hit
AGCCAGAATACTCAGTCCATCACCAACCTGA5460.11441767480652724No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5330.1116934444539909No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5270.11043610736820489No Hit
GTTCGTTTCCCGGAGTACAACAACAAAGGCC5150.10792143319663286No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5120.10729276465373985No Hit
ACCCCGCTGCCGCCGGTTTCTCCGGGCGATC5030.10540675902506083No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5010.10498764666313216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)