FastQCFastQC Report
Wed 8 May 2024
EGAF00007960524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496371
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17150.3455076948492156No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15930.3209293048949274No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15780.3179073717038264No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG15640.31508690072546547No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG15630.3148854385127253No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15510.3124678919598446No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14860.29937284813174014No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13990.2818456356233543No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13390.26975790285895024No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12410.2500146060104237No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10950.2206011229503738No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT10930.22019819852489367No Hit
GGCGTCAGTTGCGTTAACGCCGGCCGCTACGTTGGTGATGCGAC10900.21959381188667348No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9850.1984402795489664No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9330.18796424448648288No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8610.17345896516919804No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7640.1539171305334115No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7600.15311128168245125No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7590.15290981946971116No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7520.1514995839805307No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7370.14847765078942968No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7290.14686595308750916No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7290.14686595308750916No Hit
AACACGCGGTGGCAGCAGCCATTTGGATGCTTCAATGCTACCCA7260.14626156644928892No Hit
CAGACCCAGGTCGTCATCCTGGATTTCCAGTGCGTTATCCTGGA6860.13820307793968623No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6750.1359869935995455No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6580.13256213598296437No Hit
CAGATCGTCATCCTGGATTTCCAGCGCGTTGTCCTGGAAAACCT6080.12248902534596098No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5820.11725100781471924No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA5790.11664662117649902No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5760.11604223453827883No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5680.11443053683635829No Hit
AATGCTGCCAGAACCAATTGCCACAGAATCTTTACCCTGCGCGT5670.11422907462361823No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5510.11100567921977715No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5430.1093939815178566No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5390.10858813266689633No Hit
ACGCTGATTGGTAGAGCTGCCAACGGAGATGGTGTTTTCTTCTT5330.10737935939045594No Hit
TGGCAGGCCAACCACGCGCGGCGGCAGCAGCCATTTAGATGCTT5160.10395450177387477No Hit
CGGACGTACCGGGGCGAATGCCTGACCCGCTGCCTGGGTCAGGC4990.10052964415729364No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4990.10052964415729364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)