FastQCFastQC Report
Wed 8 May 2024
EGAF00007960526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483065
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17620.3647542256218107No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16020.3316323890159709No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG14970.30989618374338856No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT14960.3096891722646021No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG14880.3080330804343101No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14320.29644043762226613No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14260.29519836874954714No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14160.2931282539616822No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12290.2544171074286069No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10900.2256425118772836No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10870.2250214774409241No Hit
GGCGTCAGTTGCGTTAACGCCGGCCGCTACGTTGGTGATGCGAC10850.2246074544833511No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT10650.22046722490762113No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9180.19003653752600583No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8740.18092803245939987No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8590.17782286027760238No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8480.17554573401095092No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7910.16374607972012048No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7350.15215343690807653No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7120.14739217289598708No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7060.14615010402326808No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7010.14511504662933558No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6960.1440799892354031No Hit
CAGACCCAGGTCGTCATCCTGGATTTCCAGTGCGTTATCCTGGA6780.14035378261724613No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6520.13497148416879717No Hit
AACACGCGGTGGCAGCAGCCATTTGGATGCTTCAATGCTACCCA6450.13352240381729166No Hit
CAGATCGTCATCCTGGATTTCCAGCGCGTTGTCCTGGAAAACCT6370.1318663119869997No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6130.12689803649612372No Hit
AATGCTGCCAGAACCAATTGCCACAGAATCTTTACCCTGCGCGT6020.12462091022947222No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5930.12275780692039373No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5910.12234378396282074No Hit
ACGCTGATTGGTAGAGCTGCCAACGGAGATGGTGTTTTCTTCTT5580.11551240516286627No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5510.11406332481136078No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5500.1138563133325743No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA5310.1099230952356308No Hit
CGGACGTACCGGGGCGAATGCCTGACCCGCTGCCTGGGTCAGGC5280.10930206079927131No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5240.10847401488412532No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5150.10661091157504685No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5030.10412677382960886No Hit
TGGCAGGCCAACCACGCGCGGCGGCAGCAGCCATTTAGATGCTT5000.10350573939324936No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4890.10122861312659787No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4850.10040056721145187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)