FastQCFastQC Report
Wed 8 May 2024
EGAF00007960527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483065
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40090.8299090184550733No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38590.7988572966370986No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18950.39228675230041504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15820.32749215944024096No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC15530.3214888265554325No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15070.31196629853125357No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15000.31051721817974803No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG13460.27863745044662724No Hit
GATGGCGCGGACGCTAACGCTCAGGGTAAAG11880.24592963679836047No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG11380.23557906285903554No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11290.23371595954995703No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10880.2252284889197106No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10690.22129527082276712No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10510.21756906420461014No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC9800.20287124921076874No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9220.1908645834411518No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9170.1898295260472193No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8360.17306159626551293No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7820.161882976411042No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7680.15898481570803102No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7440.15401654021715505No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7310.15132539099293055No Hit
GTATCTGCTATCCAGATCGGTAAGTGGGGCA7120.14739217289598708No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7090.14677113845962758No Hit
CTGGGTGTATCCGCAATCCAGATTGGCAAAT7050.1459430925444816No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6840.14159585148996512No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6790.14056079409603262No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6410.13269435790214568No Hit
CACGAATCTACCGTGCGTTTCCCGGAGTACA6240.1291751627627752No Hit
ATTGTAACCACGGGTTCTACTAAATACTTCA6210.1285541283264157No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6200.1283471168476292No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6130.12689803649612372No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6130.12689803649612372No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5930.12275780692039373No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5870.12151573804767475No Hit
AGCCAGAATACTCAGTCCATCACCAACCTGA5820.12048068065374225No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5560.11509838220529328No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC5380.11137217558713632No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5370.11116516410834981No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5270.10909504932048483No Hit
ACCCCGCTGCCGCCGGTTTCTCCGGGCGATC5130.10619688861747384No Hit
GTTCGTTTCCCGGAGTACAACAACAAAGGCC5120.10598987713868734No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4910.10164263608417087No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4870.10081459016902487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)