FastQCFastQC Report
Wed 8 May 2024
EGAF00007960528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486811
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT39990.8214687014056791No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA29890.6139959861219241No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT18420.3783809322303728No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC14250.2927214052270799No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT13410.275466248708431No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG12470.2561569068899429No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11150.22904166093206604No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9950.20439143733399615No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT9500.19514760348471996No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9390.19288799965489686No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9170.18836879199525072No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG8120.16679984634693956No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA8040.16515649810706826No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT7590.15591266425779204No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT7300.1499555268882585No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6920.1421496227488697No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6890.14153336715891793No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6780.13927376332909486No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6760.13886292626912705No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT6690.13742499655923962No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6110.1255107218201725No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5860.12037525857057463No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT5820.11955358445063895No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC5810.11934816592065504No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5670.11647230650088022No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5650.11606146944091239No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5550.11400728414107324No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5460.11215851737121799No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA5270.10825556530152358No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5210.1070230541216201No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5100.10476345029179703No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5020.10312010205192569No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT4900.10065507969211872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)