FastQCFastQC Report
Wed 8 May 2024
EGAF00007960530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464767
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT37130.7988949301477946No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA27960.6015917653361792No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT16570.3565227307446527No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT13270.2855194108015414No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC13260.2853042492259562No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG11820.2543209823416895No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10470.2252741696376894No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT9560.20569446625943755No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9470.20375801207917085No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8510.183102500822993No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8360.17987507718921525No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA8130.17492636095075598No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG7770.16718054422968928No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6810.14652503297351147No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6750.14523406352000034No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT6570.141361155159467No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6540.14071567043271146No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT6500.1398550241303707No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6460.13899437782802995No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT6420.13813373152568922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6230.13404566158957068No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6000.1290969453511114No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5740.12350274438589659No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5670.12199661335680029No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5600.120490482327704No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT5550.11941467444977806No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC5430.11683273554275583No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5360.11532660451365954No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5210.11209918087988174No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA5210.11209918087988174No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4960.10672014149025211No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4940.10628981833908173No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4940.10628981833908173No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT4900.105429172036741No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4880.10499884888557061No Hit
GATCAGTGGGTTGAACGCCTGTTTAACTTTTTTTGGGTGTTTCT4770.10263207155413359No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4730.10177142525179284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)