FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464767
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39710.8544066166487724No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA35900.7724300563508166No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC27240.5861001318940459No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT17530.3771782420008305No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG13560.29175909649351184No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG13470.2898226423132451No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12530.26959745420823766No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC12440.267661000027971No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11230.24162644938216354No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10530.22656513909120055No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG10130.21795867606779312No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC9440.2031125273524153No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG8570.18439347027650416No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8210.17664765355543746No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC7970.171483775741393No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7750.16675022107851892No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA7540.16223182799123No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7190.15470117284574852No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7010.1508282644852152No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA6950.14953729503170407No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA6700.1441582556420744No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6650.14308244776414847No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6640.14286728618856329No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG6550.14093083200829665No Hit
ATGATCATCAACCACAACACCAGCGCAATCA6210.13361533843840032No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6170.13275469213605956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6120.13167888425813365No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5860.12608468329291883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5730.12328758281031141No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG5690.12242693650797065No Hit
ACCGCGACTCGCATGACCTCCGGTGAAGCTC5640.12135112863004474No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5550.11941467444977806No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5490.11812370499626695No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5370.11554176608924473No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5300.11403563506014842No Hit
GCACGCCCGGAAACCCCGTCCCCGGCAATTC5240.11274466560663732No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5190.11166885772871138No Hit
GACGATGTGTGGACCAGCGGTTCTGACTCCG5150.11080821142637064No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5140.11059304985078545No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5130.11037788827520027No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5040.10844143409493359No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5010.10779594936817805No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4900.105429172036741No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4720.10155626367620765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)