FastQCFastQC Report
Wed 8 May 2024
EGAF00007960532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485719
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT40260.8288743079846579No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA29510.6075529266921821No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT17560.3615259028368254No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC15400.3170557462236396No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT14110.2904971804685425No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG12730.26208569152122935No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11300.23264480080046282No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9800.20176274759686158No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9730.20032158511402687No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT9410.19373341376392525No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9380.19311577269985322No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA8490.17479242113238314No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG7750.1595572748852732No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT7370.1517338214070275No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT7200.14823385537728603No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6980.1437044875740912No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6730.1385574787068243No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6590.13567515374115485No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6490.1336163501942481No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6420.13217518771141337No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6260.12888110203636258No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6130.12620465742538384No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5960.12270469139564234No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT5930.12208705033157032No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5860.12064588784873559No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT5840.12023412713935425No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5730.1179694432377568No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC5500.11323419507987129No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT5420.11158715224234589No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5070.10438133982817224No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4910.10108725415312145No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4880.10046961308904942No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4880.10046961308904942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)