FastQCFastQC Report
Wed 8 May 2024
EGAF00007960534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469676
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT38240.8141782846047062No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA27960.5953039967977926No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT17450.37153271617029615No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT13850.29488413289161036No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC13650.29062587826501673No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG11800.25123702296902545No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10540.22441001882148545No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9880.2103577785537264No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9340.19886049106192355No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT9340.19886049106192355No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8340.17756921792895528No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG8190.17437552695901004No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA8180.17416261422768037No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6930.14754852281147005No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT6780.14435483184152478No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6450.13732871170764527No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT6440.13711579897631557No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6190.13179298069307352No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6090.1296638533797767No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT6070.12923802791711733No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6030.1283863769917986No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6000.12774763879780954No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT5960.12689598787249082No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5740.12221190778323782No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5600.11923112954462226No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5420.11539870038068797No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5380.11454704945536923No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT5290.1126308348734021No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC5220.11114044575409432No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5140.10943714390345685No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4960.10560471473952257No Hit
AACACGGTAGGTATCCGGTACGCCGGTCGGTTCGAAATCACCGG4880.1039014128888851No Hit
CAGTGGGTCACCCAGGGACAGCTGGCTGTTCACCTCTTTACGCA4860.10347558742622574No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4790.10198519830691796No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4780.10177228557558828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)