FastQCFastQC Report
Wed 8 May 2024
EGAF00007960535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469676
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39310.8369599468569822No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA37010.7879900186511554No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC27010.5750772873214727No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT18480.3934627274972534No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG14180.3019102530254899No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG14170.30169734029416023No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC12470.2655021759681142No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12320.26230848499816894No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12260.26103100861019085No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG10610.22590040794079322No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10500.2235583678961667No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC8900.1894923308834175No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC8380.17842086885427402No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8350.17778213066028498No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG8350.17778213066028498No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7990.17011727233241639No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA7480.1592587230346026No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.1564908575273167No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA7310.15563920660199798No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA6890.1466968718861513No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6710.14286444272221702No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6570.13988366448360146No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG6490.13818036263296402No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6390.13605123531966717No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6210.1322188061557329No Hit
ATGATCATCAACCACAACACCAGCGCAATCA6200.1320058934244032No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6130.13051550430509543No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG6120.13030259157376575No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5860.124766860559194No Hit
ACCGCGACTCGCATGACCTCCGGTGAAGCTC5800.12348938417121591No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5380.11454704945536923No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5310.11305666033606145No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5250.11177918394808335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5210.11092753302276463No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5090.10837258024680844No Hit
GCACGCCCGGAAACCCCGTCCCCGGCAATTC5010.10666927839617098No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC4970.10581762747085224No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4970.10581762747085224No Hit
GACGATGTGTGGACCAGCGGTTCTGACTCCG4920.10475306381420384No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4910.10454015108287415No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4880.1039014128888851No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG4860.10347558742622574No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4820.10262393650090701No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4770.10155937284425859No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4750.10113354738159923No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4710.1002818964562805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)