FastQCFastQC Report
Wed 8 May 2024
EGAF00007960539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467915
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42790.9144823311926311No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41420.8852035091843603No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30680.6556746417618584No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC24210.5174016648322879No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24010.5131273842471389No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22550.4819251359755511No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20780.4440977527969824No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA19880.42486349016381175No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19240.411185792291335No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16390.35027729395296153No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14920.3188613316521163No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG14180.30304649348706497No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14160.30261906542855005No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13740.2936430761997371No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13590.2904373657608754No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA13400.2863767992049838No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11810.25239626855304914No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11770.25154141243601935No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10910.2331620059198786No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10580.22610944295438276No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10410.2224763044570061No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG9980.21328660119893572No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG9960.2128591731404208No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9640.20602032420418237No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC9490.20281461376532062No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9430.20153232958977593No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9430.20153232958977593No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC8980.19191519827319065No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA8520.18208435292734793No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8430.18016092666403086No Hit
ACCGGCCCGACTCTGACTACCCACTCTTGCT8400.1795197845762585No Hit
CAGGACCCACGTTTTACTGACACCCTGGTGG8390.17930607054700104No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8370.17887864248848614No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8360.1786649284592287No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8340.17823750040071382No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG7900.168834083113386No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC7850.1677655129670987No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7630.1630638043234348No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7550.1613540920893752No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7130.15237810286056228No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.15109581868501756No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7030.15024096256798777No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6960.14874496436318563No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6820.1457529679535813No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6770.14468439780729406No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC6650.14211982945620463No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6410.13699069275402584No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6380.13634955066625348No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6210.13271641216887684No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA6190.13228898411036194No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5880.12566384920338095No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5800.12395413696932135No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5620.12010728444268724No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5610.1198935704134298No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5550.11861128623788508No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5510.11775643012085528No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5490.11732900206234038No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5290.11305472147719138No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5210.11134500924313176No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5170.11049015312610197No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA5000.1068570146287253No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4730.10108673583877413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)