FastQCFastQC Report
Wed 8 May 2024
EGAF00007960547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497663
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43480.8736835971329996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19390.38962108896984504No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19260.38700887950279605No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17780.3572698794163922No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA17200.3456154064095583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17090.3434050753220553No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13400.26925851429581865No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12440.24996835207761076No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12270.24655238585146977No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10930.2196265344218879No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA10910.21922465604234193No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10770.21641150738551992No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10690.21480399386733592No Hit
GCAGATGGTACTACCGTTACGAGCGGCTCCA10370.20837393979459998No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9990.200738250583226No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9850.197925101926404No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9750.19591571002867403No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9660.19410725732071704No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9060.1820509059343371No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9060.1820509059343371No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA8730.1754199126718281No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8520.17120018968659514No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA8390.16858798021954616No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7830.1573353855922582No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7700.15472317612520922No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7620.15311566260702525No Hit
TCCGTCTATAACTCTGGCCGTAAAGGTCCGG7520.15110627070929525No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7440.14949875719111125No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7090.1424658855490563No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC7020.1410593112206453No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA6780.13623677066609333No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6750.13563395309677434No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6610.13282080443995234No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6570.13201704768086034No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6510.13081141254222234No Hit
GCCCCACCGTATACCAACGAACAGGCATACC6220.12498417603880538No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6200.12458229765925938No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6130.12317572333084839No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6120.12297478414107538No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5820.11694660844788542No Hit
GTTGCAGGTGGCGCAGATATCGATTACGCAA5810.11674566925811243No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5780.11614285168879343No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5700.11453533817060943No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5510.11071749356492244No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5500.11051655437514946No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5480.11011467599560344No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5400.10850716247741946No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC5290.10629683138991648No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5140.1032827435433215No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5030.1010724124558185No Hit
GCGCTGGCTCGCCTGGACGCCGAACAGCGTG4980.10006771650695351No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4980.10006771650695351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)