FastQCFastQC Report
Wed 8 May 2024
EGAF00007960551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504513
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42810.8485410683173674No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19530.38710598141177727No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19330.38314176245210724No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17860.3540047530985327No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA17650.34984232319087916No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16670.33041765028849607No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13330.26421519366200674No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13270.26302592797410573No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12350.24479052075962365No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11430.22655511354514155No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11100.220014152261686No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11080.21961773036571902No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA10840.214860667614115No Hit
GCAGATGGTACTACCGTTACGAGCGGCTCCA10760.21327498003024697No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10530.20871612822662647No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10290.20395906547502246No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10270.20356264357905543No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10150.2011841122032534No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA9360.18552544731255685No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9210.18255228309280433No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9200.18235407214482086No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA8640.1712542590577448No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8640.1712542590577448No Hit
TCCGTCTATAACTCTGGCCGTAAAGGTCCGG7820.15500096132309774No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7690.1524242189993122No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC7690.1524242189993122No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7670.15202779710334519No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7590.1504421095194772No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC7120.14112619496425266No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA6970.13815303074450014No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6840.13557628842071462No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6780.1343870227328136No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6610.1310174366170941No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6610.1310174366170941No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6560.1300263818771766No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6440.1276478505013746No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6330.12546753007355607No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6000.11892656879010056No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5990.11872835784211705No Hit
GCCCCACCGTATACCAACGAACAGGCATACC5990.11872835784211705No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5940.11773730310219956No Hit
GTTGCAGGTGGCGCAGATATCGATTACGCAA5870.11634982646631503No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5730.11357487319454602No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5520.10941244328689251No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5510.10921423233890899No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5390.106835700963107No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5280.10465538053528849No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC5140.10188042726351947No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5130.10168221631553598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)