FastQCFastQC Report
Wed 8 May 2024
EGAF00007960553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525670
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44510.8467289364049689No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41460.7887077444023817No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24840.47253980634238213No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19220.36562862632450016No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16650.3167386383092054No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16130.3068465006563053No Hit
ATGTCCAACATGGACATCGATGGTATTAACA13590.2585272128902163No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12400.2358894363383872No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11970.22770939943310442No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9210.17520497650617306No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG8690.16531283885327297No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8650.16455190518766527No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8470.16112770369243062No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7600.1445773964654631No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7050.13411455856335724No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6890.13107082390092645No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6660.12669545532368215No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6620.12593452165807445No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6390.12155915308083018No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6000.11414004984115511No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5840.11109631517872429No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5540.10538931268666654No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5380.10234557802423574No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5340.10158464435862803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)