FastQCFastQC Report
Wed 8 May 2024
EGAF00007960554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504191
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24180.47958015910637036No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19880.394295019149489No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19130.3794197040407306No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18320.3633543637232715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18140.35978428809716956No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14850.29453123915341606No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG12680.25149199410540846No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11820.23443496611403217No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11810.23423662857924876No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11100.22015466360962413No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8630.17116529251811316No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7990.1584716902919727No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7200.14280302504408052No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6930.1374479116049275No Hit
GGTGCTGCGGGTGCCACCACCTTTCGGGGAACCACCACCTTTCG6910.1370512365353606No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6440.12772937240053867No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6410.12713435979618834No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6240.12376262170486978No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5960.11820917073093332No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5950.11801083319614987No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5580.11067234440916239No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5220.10353219315695837No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5160.1023421679482577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)