FastQCFastQC Report
Wed 8 May 2024
EGAF00007960555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504191
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41080.8147705928903928No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40960.8123905424729914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40530.8038620284773033No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23740.4708533075758988No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16400.32527355704485006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15340.30424977835780487No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14930.29611793943168363No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12330.2445501803879879No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11870.2354266537879494No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11110.22035300114440756No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8920.17691708102683307No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG8320.1650168289398264No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8020.15906670289632302No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7280.1443897253223481No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6670.13229113570055792No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6530.1295144102135897No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6310.1251509844483539No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5840.11582912031353199No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5810.11523410770918163No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5770.11444075757004787No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5720.11344906989613063No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5360.10630891864392661No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5320.10551556850479282No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5140.10194549287869083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)